Health Sciences Publications of Kenneth Paul Baclawski
- K. Baclawski, R. Futrelle, N. Fridman and M. Pescitelli. Database techniques for biological materials & methods.
In First Int. Conf. Intell. Sys. Molecular Biology, pages 21-28. (1993) [pdf]
- K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques.
In Proc. Sympos. Adv. Data Management for the Scientist and Engineer, pages 23-28. (1993) [pdf]
- K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. Northeastern University, College of Computer Science. (1993)
- K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. Data/knowledge bases for biological papers and techniques. Northeastern University. (1993)
- K. Baclawski, R. Futrelle, C. Hafner, M. Pescitelli, N. Fridman, B. Li and C. Zou. M&M-Query: Materials & Methods Knowledge Base and Query System. Northeastern University. (1993)
- K. Baclawski and N. Fridman. M&M-Query: Database support for the annotation and retrieval of biological research articles. Northeastern University, College of Computer Science. (1994) [pdf]
- C. Hafner, K. Baclawski, R. Futrelle, N. Fridman and S. Sampath. Creating a Knowledge Base of Biological Research Papers.
In Proc. Second Int. Conf. Intell. Sys. Molecular Biology, pages 147-155. (1994) [pdf]
- K. Baclawski. Scientific Databases Project Final Report. Northeastern University. (1997) [pdf]
- K. Baclawski, J. Cigna, M.M. Kokar, P. Mager and B. Indurkhya. Knowledge Representation and Indexing Using the Unified Medical Language System.
In Pacific Symposium on Biocomputing, pages 490-501. (2000) [pdf] [ppt]
- K. Baclawski, T. Niu and E. Neumann. Using DAML format for representing complex gene networks: implications in novel drug discovery. Amer. J. Human Genetics 69 (Suppl)(4):457. Presented at the 51st Annual Meeting of the Amer. Soc. Human Genetics in San Diego, CA on October 12-16, 2001. (2001) [pdf] [ppt]
- K. Baclawski, T. Niu and E. Neumann. PathML: An ontology for biochemical pathways.
In ISMB Workshop. (2001) [pdf] [ppt]
- T. Niu, K. Baclawski, S. Huang and J. Letkowski. MotifML: A Novel Ontology-based Language for Protein-Binding Motifs: Implications in Dissecting the Genetic Regulatory Circuitry. Harvard University, Division of Preventive Medicine. (2003) [pdf] [ppt]
- T. Niu, K. Baclawski, Y. Feng and H. Wang. Database Schema for Management and Storage of Single Nucleotide Polymorphism. Am. J. Human Genetics 73 (Suppl):A467. (2003)
- K. Baclawski. Web Technologies for Bioinformatics. Division of Preventive Medicine, Brigham and Women's Hospital, Harvard Medical School. Invited presentation. (October, 2003) [pdf] [ppt] [links]
- K. Baclawski. Mining the Biomedical Research Literature. Department of Statistics, Harvard University. Invited presentation. (November, 2003) [pdf] [ppt]
- T. Niu, K. Baclawski, Y. Feng and H. Wang. Ontology and database for Single Nucleotide Polymorphism. Harvard University. (2003)
- K. Baclawski and T. Niu. Genepack distributed bioinformatics system. Harvard Medical School. (2003)
- K. Baclawski and T. Niu. Ontologies for Bioinformatics. MIT Press, Cambridge, MA. (October, 2005)
- K. Baclawski. Probabilistic foundations of meta-analysis. Talk at the Harvard School of Public Health. (March 4, 2005) [pdf] [ppt]
- K. Baclawski. Introduction to the Semantic Web for Bioinformatics. CSB2005 Tutorial. (August 8, 2005) [pdf] [ppt]
- K. Baclawski. Applications of the Semantic Web for the Life Sciences. Talk at SRI. (August 9, 2005)
- K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Massachusetts Biotech Council Tutorial. (August 23, 2005) [pdf] [ppt] [links]
- K. Baclawski. Introduction to the Semantic Web for Bioinformatics. Collaborative Expedition Workshop on Advancing Toward Credible Agreements Around Information Sharing Environments, Governance, and Data Architecture. Keynote address. (December 6, 2005) [pdf] [ppt] [links]
- K. Baclawski. The Bayesian Web: Adding Reasoning with Uncertainty to the Semantic Web. Bio-IT Conference. (April 4, 2006) [pdf] [ppt] [links]
- K. Baclawski. Some Major Biomedical Challenges. NLM. (2006) [pdf] [doc]
- K. Baclawski. Emerging Semantic Web Applications for the Life Sciences. Massachusetts Biotech Council Tutorial. (June 29, 2006) [pdf] [ppt] [links]
- K. Baclawski and T. Niu. Bioinformatics. Jaico Publishing, Mumbai, India. (2007)
- K. Baclawski and N. Sarkar. Enhancing Organism Based Disease Knowledge Via Name Based Taxonomic Intelligence.
In An Open Ontology Repository (OOR): Rationale, Expectations and Requirements. Ontolog Forum. Member of the Panel. (March 27, 2008) [pdf] [ppt] [links]
- K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. Talk at MIT. (September 25, 2012)
- K. Baclawski, Y. Yin and H. Yu. Biomedical Terminology in the ICU. Talk at University of Toronto. (October 29, 2012)
- K. Baclawski. Relationships between the biomedical terminology used by clinicians and medical test measurement results in intensive care units.
In Critical Data: Secondary Use of Big Data from Critical Care. Poster presentation. (January 7, 2014) [pdf]
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